Research Focus Areas


Structural Biology

Faculty
Research Interests

Bagdasarian, M. Structural biology
Cukier, Robert Quantum and classical mechanics methods development for simulation of reaction mechanisms in enzymes
Feig, Michael Modeling supramolecular assemblies and membrane environments. Protein structure prediction and refinement
Ferguson-Miller, Shelagh Defining functionally important structural features of protein:protein interface between cytochrome c and cytochrome oxidase
Hausinger, Robert Structure/function studies of enzymes and biological processes involving metal ions
Hoogstraten, Charles RNA catalysis and RNA-protein interactions; biomolecular NMR and EPR methods and applications
Kron, Michael Drug development
Kroos, Lee Determining the structures of bacterial transcription factors
Kuhn, Leslie Developing computational approaches for protein folding, ligand interactions, and design
Lapidus, Lisa Study fast folding processes using laser spectroscopy and microfluidics
Levy, Ronald Computational approaches to protein structure, folding, dynamics, and ligand binding; structural biology of transcription and macromolecular machines
Maggiora, Gerald Drug design, ligand-protein interactions, protein structure, SAR
Preiss, Jack Structural biology, evolutionary modeling
Seibold, Steve Computational methods (Molecuar Dynamics, Docking, etc.) to investigate protein structure function relationships in ligand binding and water chain formation necessary for enzyme activity
Torng, Eric Developing algorithms for identifying disulfide bonds given mass spectral data
Vieille, Claire Studying the determinants of protein thermostability using heperthermophilic enzymes as models
Wei, Guowei Advanced numerical methods for the structure and dynamics of biological macromolecules
Weliky, David NMR and crystallography for structure determination of viral fusion peptides and proteins
Wenkert, David Collaborations in drug design in the areas of infectious diseases and cancer
Yan, Honggao Protein structure, function and dynamics with applications to protein engineering and structure-based drug design
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Evolutionary Modeling


Faculty
Research Interests

Adami, Chris Understanding how the fundamental principles of evolution shape genomes, populations, and ecosystems
Ferguson-Miller, Shelagh Analysis of evolutionary changes in higher primate cytochrome c and cytochrome oxidase
Getty, Thomas Evolution of signaling, social behavior and life history strategies
Goodman, Erik The Genetic Algorithms Research and Applications Group (GARAGe) studies and advances evolutionary computation, building on principles abstracted from nature
Huebner, Marianne Host-parasite systems in mathematical ecology: statistical issues in data analysis of microarray experiments; genetic association for complex traits; biological networks
Kuhn, Leslie Relating structural and conformational changes in proteins to amino acid mutations
Preiss, Jack Structural biology, evolutionary modeling
Sun, Fengzhu Mutation mechanisms of PCR, microsatellite evolution
Torng, Eric Evaluating and developing algorithms for phylogeny reconstruction
Vieille, Claire Changing enzyme substrate and cofactor specificities, changing enzyme stability to temperature and pH
   
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Systems Biology
Center for Systems Biology


Faculty
Research Interests

Chan, Christina Integrating various levels of information from genetic expression to metabolic data
Cheng, Hans Structural and functional genomics of disease resistance in chicken.
Cukier, Robert Modelling kinetics and electrostatic interactions of protein assemblies
Harrison, Michael Physics of sensory thresholds in primates: signal-to-noise factors in theoretical neuroscience
Hartmann, William Test theories of sound localization and binaural hearing against experiments on human listeners
Huebner, Marianne Host-parasite systems in mathematical ecology: statistical issues in data analysis of microarray experiments; genetic association for complex traits; biological networks
Kroos, Lee Molecular mechanisms of signaling and gene regulation during bacterial development
Kuhn, Leslie Modeling flexibility and folding in proteins by analyzing bond networks
Levy, Ronald Transcriptional regulation and gene expresion, statistical models for biological networks
Maggiora, Gerald Relational methods in biology and mathematical modeling
Shachar-Hill, Yair We study metabolic networks in plant systems including developing seeds and mycorrhizas
Sun, Fengzhu Interaction networks, protein function
Tang, Moxun Signal transduction pathway leading to the activation of the transcriptional factor NF-KappaB
Tomanek, David Nanostructures
Vieille, Claire Comparing flexibility in mesophilic and hyperthermophilic proteins by NMR and molecular dynamics
   
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